To setup the modern interface, move the "pcsx.exe.manifest" file  in to the "PCSX_Debugger" folder.
To fix the GPU Plugin Pete's OpenGL Driver 2.9 error, setup the "Render mode" 1: Render to pbuffer.
The cdrmooby2 plugin can shown the error "Track number out of bounds" if executable emulator file is named not: 
 pcsx.exe, pcsx2.exe, epsxe.exe.